Samprit Banerjee

• Research
• Biography
• Publications

Publications

1. Banerjee, S., B. S. Yandell and N. Yi (2009) Bayesian genome-wide interacting QTL mapping for multiple traits. Genetics (in review).

2. Yi, N and S. Banerjee, (2009) Hierarchical generalized linear models for multiple QTL mapping. Genetics, 181:1101-03

3. Banerjee, S., Yandell, B.S. and Yi, N. (2008) Bayesian QTL mapping for multiple traits. Genetics, 179:2275-89.

4. Yi, N., Shriner, D., Banerjee, S., Mehta, T., Pomp, D. and Yandell, B.S. (2007) An efficient Bayesian model selection approach for interacting QTL models with many effects. Genetics, 176: 1865-77

5. Yi, N., Banerjee, S., Pomp, D. and Yandell, B. S. (2007) Bayesian mapping of genome-wide interacting QTL for ordinal traits. Genetics 176: 1855-64

6. Poptsova, M., Banerjee, S., Gokcumen, O., Rubin, MA, Demichelis, F. (2011) Impact of Copy Number Variants in Biological Pathway Evolution. Submitted to Mol. Bio. & Evol.

7. Banerjee S, Oldridge, D., Poptsova, M., Hussain, W.H., Chakravarty, D., Demichelis, F. (2011) A Computational Framework Discovers New Copy Number Variants with Functional Importance. PLoS One, 6(3):e17539.

8. Demichelis F., Setlur SR, Banerjee S, Chakravarty D, Chen CX, Chen JYH, Huang J, Oldridge DA, Kitabayashi N, Stenzel B, Schaefer G, Horninger W, Bektic J, Chinnaiyan AM, Goldenberg S, Siddiqui J, Regan M, Kearney M, Soong TD, Rickman DS, Elemento O, Wei J, Sherr D, Sanda MA, Bartsch G, Lee C, Klocker H, Rubin MA. Identification of a functionally active low frequency copy number variant locus at 15q21.3 associated with prostate cancer risk. Submitted to Proc Nat Assoc Sci.

9. Esgueva R, Park K, Kim R, Kitabayashi N, Barbieri CE, Dorsey, PJ, Abraham C, Banerjee S, Leung, R, Tewari AK, Terry S, Shevchuk M, Rickman DS, and Rubin MA. Next Generation Prostate Cancer Biobanking: Towards processing a protocol amenable for the International Cancer Genome Consortium. Diag. Mol. Path.

10. Oldridge, DA., Banerjee, S., Setlur SR, Sboner, A., and Demichelis, F. (2010) Detecting copy number variants using genome-wide oligonucleotide arrays. Nucleic Acid Research, 38:3275-86

11. Yandell, B.S., Mehta, T., Banerjee, S., Shriner, D., Venkataraman, V., Moon, J.Y., Neely, W.W., Wu, H., Smith, Rv and Yi,N.(2007) R/qtlbim: QTL with Bayesian interval mapping. Bioinformatics, 25: 641-3.

12. Fleischut PM, Faggiani SL, Lelli GJ, Segal KL, Banerjee S, Mack PF, Weingram, MD,⁷ and Gadalla F, Corneal Abrasion: Assessment of Risks and Long Term Sequelae. Submitted to Anesthesiology.

13. Rickman D. S., Chen Y-B, Banerjee S., Pan Y., Yu J, Vuong T, Perner S, Lafargue C., Mertz K. D, Setlur S. R., Sircar K., Chinnaiyan A. M, Bismar T. A, Rubin M. A. and Demichelis F. (2010) ERG Cooperates with Androgen Receptor in Regulating Trefoil Factor 3 in Prostate Cancer Disease Progression. Neoplasia, 12:1031-1040.

14. Palanisamy, N., Ateeq B, Kalyana-Sundaram S, Banerjee, S., Demichelis, F., Rubin, MA, Maher, CA, Chinnaiyan, A. and others. (2010) Rearrangements of the RAF Kinase Pathway in Prostate Cancer, Gastric Cancer and Melanoma. Nature Medicine, 16: 793-8

15. Setlur, S., Chen, C.X., Hossain, R. R., Van-Doren, V. E., Stenzel, B., Steiner, E, Olridge, D., Katabayashi, N., Banerjee, S., Sook, J.H., Chen, J. Y., Schafer, G., Horninger, W., Lee, C., Rubin, M. A., Klocker, H., and Demichelis, F. (2009) Genetic variation of genes involved in dihydrotestosterone metabolism and the risk of prostate cancer (2010) Cancer Epidemiology, Biomarkers & Prevention 19(1):229-39

16. Mikuls, T.R, Saag, K.G, George. V, Mudano, A.S. and Banerjee, S. (2004) Racial Disparities in the receipt of Osteoporosis related healthcare among community-dwelling older women with arthritis and previous fracture. J of Rheumatology 32: 870-875.